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Aug 4, 2013

Measles like illness outbreak in Upper Mustang, Nepal


Science and Technology Conference 2009, Huachiew Chalermprakiet University, Thailand; 10/2009

ABSTRACT
Background: Since 2004, there have been increasing reports of rubella outbreaks in Nepal, through the Vaccine Preventable Diseases (VPDs) surveillance network. This report details an investigation of a suspected “measles-like illness” outbreak in Mustang, a remote and hard to reach Himalayan district in the Western part of Nepal.

Methods: The Mustang District Rapid Response Team (RRT) investigated the outbreak in Chhonup and Lomanthang villages in Mustang, beginning on the 17th of June 2008, following the standard measles outbreak investigation guidelines. Blood samples were collected from seven children within 4 to 28 days of rash onset. All the samples were tested for both measles and rubella IgM antibodies in the National Public Health Laboratory (NPHL) in Kathmandu, Nepal

Results: Forty-eight cases were detected at the time of the investigation. There were two waves in the outbreak. The first occurred at the beginning of April, and the second from mid-May to mid-June. The primary attack rates were 1% and 4% in Lomanthang and Chhonup respectively. The primary attack rates were highest in the 1 – 9 year old population. No deaths in children with measles-like illness were reported from either village during this investigation. All children found with measles-like illness had been immunized against measles. All 7 serum samples were confirmed to be IgM positive for anti-rubella. The remaining 41 cases with measles like illness were considered epidemiologically linked to these laboratory-confirmed cases, and classified as rubella.

Conclusion: Since there is no vaccination against rubella in Nepal, the number of rubella susceptible individuals in the population has increased. Once the virus was introduced into the community, it spread very quickly and affected many susceptible individuals. It is highly recommended that rubella vaccinations be included in the National Immunization Programme (NIP) of Nepal.

Chhonup Village
 

Aug 3, 2013

Dengue Outbreak in Honduras


2010

Death =  83
Illness = > 66000

2013

Death    = 16
Illness   = 12000
 
Link:
http://abcnews.go.com/International/wireStory/honduras-declares-emergency-dengue-kills-16-19822037

Revisiting Cholera Outbreak in Jajarkot, Nepal, 2009

In 2009, it took around two months before the health authorities and public knew the acute watery diarrhea (AWD) outbreak in hilly districts of Mid Western region of Nepal as cholera. That year, > 15,000 people were affected and > 200 people lost their life. There were joint Government of Nepal (GON), UNICEF and other organizations for implementation of medical and behavioral control activities. This incident demands acute need for enhanced surveillance, hygiene and sanitation promotion and selective vaccination in a high risk, remote area of the country.
 
Risk factors: In general, illiteracy and poverty are risk factors for cholera, as any other infectious diseases outbreaks in remote areas. We can add, this is further compounded by combination of following reasons:

1.     Poor or difficult access to source of drinking water

2.     Water and food contamination during monsoon due to sanitation runoff and flooding disrupting everyday life exposing community to all possible infectious diseases

3.     Poor hygiene practices like hand washing after cleaning of dirt or waste / working in the field or defecation. This may be due to poor knowledge on disease causation or simply no supplies (e.g. soap)

4.     No latrines / open defaecation – this is general picture in hard to reach areas of the country.

5.     Poor access to health care, which is geographically remote from most people. Even if there is health centre in the vicinity, there can be a situation when there is lack of health personnel and medicines.

Challenges:

1.     Geography - remote with little road access and probably limited or no electricity there. These challenges make it an important to be innovative, but it is not impossible carry out preventive measures provided we have combination of dedicated staffs / leadership with adequate resources. 

2.     Carry out effective as well as put sustainable surveillance system in place throughout country with focus to reach hard to reach areas. This demands trained health staffs and budget, which is greater challenge for low income countries.

Jul 29, 2013

A Short Note on Diseases Surveillance in Nepal

In 1996, the Government of Nepal, Ministry of Health (GoN, MoH) first launched Early Warning and Reporting System (in short EWARS) for hospital-based sentinel surveillance of six diseases: three vaccine-preventable diseases or VPDs (polio, measles and neonatal tetanus or NNT) and three vector-borne diseases - malaria, kala-azar (KA), and Japanese Encephalitis (JE). For which the implementing agency is the Epidemiology and Disease Control Division (EDCD) of the MOH. The primary goal as any surveillance system was designed to provide more timely information to the decision makers to facilitate early response. All hospitals that comes under EWARS are expected to report every week on the number of cases and/or deaths (including “zero” reports) of the six priority diseases (1). However, there remain various challenges which hinder the completeness and timeliness of the reports. We can discuss on this further.
 
The major milestone in the history of public health arena in Nepal would be the introduction of acute flaccid paralysis (AFP) for the eradication of poliomyelitis since 1996. As Nepal was signatory in the Global Polio Eradication Initiative (GPEI), Polio Eradication Nepal (PEN) - surveillance and support team was established in June 1998 by the Ministry of Health and Population in collaboration with technical support from World Health Organization, Nepal. PEN was later re-named Program for Immunization Preventable Diseases (IPD) because activities were expanded to include surveillance for other vaccine preventable diseases such as measles, neonatal tetanus, and Japanese Encephalitis(2). Currently, along with these Vaccine Preventable Diseases (VPDs), are added other infectious diseases of public health importance e.g., rubella.
In addition, there also exists system of data collection known as Health Management Information Reporting System (HMIS). In this reporting system, various illnesses as well as utilization of health services are reported from every village to districts and then to the central level on monthly basis.
Having said that there exist disease surveillance structure in place, there are astronomical challenges to be solved and taken it in right course.
  • Leadership / Ownership: Unstable political situation, frequent changes in the state government leadership and reshuffling of government key position in parallel, and their changing priority affects public health system as a whole.
  • Policy: Though disease surveillance recognized an important component of public health system at policy level, there are weakness in its implementation due to various reasons like
    • Leadership - weakness
    • Advocacy - weakness
    • Too much dependent on external funding, lacking government ownership
    • Lack of trained human resource
    • Poor infrastructure and network to carry out laboratory surveillance
    • Sample transportation problems (esp. a tremendous challenge in Nepal)
References:
  1. Pyle DF, Nath LM, Shrestha BL, Sharma A, Koirala S. Assessment of Early Warning and Reporting Systems (EWARS) in NEPAL. 2004; Available from: http://www.ehproject.org/PDF/Activity_Reports/AR-126%20EWARS-ASSESS....
  2. Field Guide for Surveillance of Vaccine Preventable Diseases (VPDs). 2010; Available from: http://www.nep.searo.who.int/LinkFiles/Guidelines_VPD_Field_Guide_2....

WHO: Global policy on the prevention and control of viral hepatitis


World Health Organization
Number of pages: 220
Publication date: July 2013
Languages: English
ISBN: 978 92 4 156463 2


The periodic evaluation of implementation of the WHO strategy requires an initial baseline survey of all Member States. In mid-2012, WHO, in collaboration with the World Hepatitis Alliance, conducted such a survey, asking Member States to provide information relating to the four axes of the WHO strategy. In particular, Member States were asked whether key prevention and control activities are being conducted. This report presents the results.

The first chapter provides an introduction to viral hepatitis and to the global response to this group of diseases. The second chapter provides a global overview of the survey findings. Chapters three through eight present findings from the six WHO regions, including summaries of data from all responding countries. Additional survey data, study methodology information and the survey instrument can be found in Annexes A–E.

Link:

http://apps.who.int/iris/bitstream/10665/85397/1/9789241564632_eng.pdf


Source:

http://centerforvaccineethicsandpolicy.net/2013/07/28/who-global-policy-report-on-the-prevention-and-control-of-viral-hepatitis/

Jul 26, 2013

Webinar - Syndromic surveillance in animal health: public, animal and food safety

IF anyone is interested to participate in a webinar organized by International Society for Disease Surveillance (ISDS) link: http://www.syndromic.org/

Title: Syndromic surveillance in animal health: public, animal and food safety

Panelists:
Anne Bronner, Anses, Laboratoire de Lyon, Unité Epidémiologie
Céline Dupuy, Anses, Laboratoire de Lyon, Unité Epidémiologie
Jean-Baptiste Perrin, Anses, Laboratoire de Lyon, Unité Epidémiologie
Fernanda Dórea, Swedish Zoonosis Centre, National Veterinary Institute (SVA)

Early detection of diseases in animal populations is key to protecting the health of companion animals and livestock. Safeguarding the health of animals aims at protecting human populations from diseases that are transmissible from animals to humans (zoonotic diseases), guaranteeing the safety of food products, and avoiding economical losses and food supply shortages due to loss of livestock. In this webinar speakers will discuss the current situation of syndromic surveillance in animal health, highlighting the challenges of dealing with animal health data in light of the current development of this field in public health. Examples of successful systems in North America and Europe will be discussed.

Registration:
https://www2.gotomeeting.com/register/341204498

Time and date: (duration - 1 and 1/2 hrs)

Location
Local timeTime zoneUTC offset
New York (U.S.A. - New York)Tuesday, 30 July 2013, 10:30:00
UTC-4 hours
Seoul (South Korea)Tuesday, 30 July 2013, 23:30:00
UTC+9 hours
Bhubaneshwar (India - Orissa)Tuesday, 30 July 2013, 20:00:00
UTC+5:30 hours
Kathmandu (Nepal)Tuesday, 30 July 2013, 20:15:00
UTC+5:45 hours
Bangkok (Thailand)Tuesday, 30 July 2013, 21:30:00
UTC+7 hours
Karachi (Pakistan)Tuesday, 30 July 2013, 19:30:00
UTC+5 hours
Yangon (Myanmar)Tuesday, 30 July 2013, 21:00:00
UTC+6:30 hours

Thinking about being a scientist

One fine day, there was a discussion and somebody out of blue raised a question regarding cross-protection between the infections caused by the two serogroups of V. cholerae. For me, uhmm... my neo cortex started getting alert to understand what it means, so I began to ask myself what is this cross protection in its literal meaning? then another question followed, what does it mean in terms of immunological explanation? While the discussion started with facts, opinions and so on, I was struggling to recall my undergraduate basics and make sure that my understainding on biotype, serogroup and serotype is correct before I blurt out "non sense". At this moment, I vividly remembered somebody saying, " hey, if you claim yourself to be a scientist or have a responsibility to carry out duty as a scientist, remember that basics ( in our cases, on V. cholerae) must be at tip of your tongue."  I agree 100 % with what he said. This few anecdotes that I have come across that I remeber and ever since, I have been haunted with 2 questions :
  1. Who are considered a scientist?
  2. What are the qualities that need to be in a scientist?
Now, let us try to explore the first question. Before entering in the field of scientific world, I was of the impression that scientists are supposed to be with thick glass, bald and of course, always in the lab or buried in the pages that is filled with equations or looking into deeper sky or ocean. Now, I am questioning the very notion of understanding, who are scientists? Am I being too skeptical. May be "Yes", may be "Not".  So, I googled this "great" word [great because scientists are considered great people in the society, so the word "scientist"also must be great / strong :)] for it straight forward meaning. First thing first, I came to know this word to be a 'noun" and its meaning as, "A person who is studying or has expert knowledge of one or more of the natural or physical sciences." So, I asked myself, "Do I fulfill the quality to be called as a scientist?" Uhmm..the answer lies within me, whether I accepted the meaning or not. But one thing I can assure you that I asserted on working hard to do justice to its meaning.
                                                 
                                                               Serogroup  Serotype   Biotype


##  Serogroup is was characterized by the presence of a capsule and a modified lipopolysaccharide.
## The serogroup O1 V. cholerae is subdivided into two serotypes based on specific antigens in the O antigen: Ogawa and Inaba. V. cholerae O1 is also divided into two biotypes based on biochemical reactions: classical and El Tor.

 

Jul 25, 2013

On writing: just a thought

I have always wanted to write a paper and get it published in a renowned journal. Here, I want to talk about one article that got published in an international journal. It is about the spread of Japanese encephalitis in hilly districts of Nepal. While starting to write the paper, I had to struggle for a whole year. I was motivated to write it but I felt the need for a coaching on writing the paper. So, I approached Dr. Jeff for his advices on writing it well. I found him inspirational and guided me providing useful tips and reviewed the paper till it got published. I miss person like him, who can guide and mentor on writing academic paper. Now, it has been about 2 years that I have not been able to publish a good paper in a good journal except poster presentation in conferences and be satisfied with it. There are some major setbacks that I have found within myself which has hindered from writing a paper. I am trying to sort it out. Let me see how it progresses. While trying to understand what can be barrier to writing down your ideas / thoughts, however absurd it may be, some of the reason could be as follows:

1.       1 % inspiration, 99 % perspiration: Somebody said so. It is true. If somebody says that he can't write saying language is a barrier or this and that in order to get excuse for not writing. It is simply complacency for not writing or in other word, procrastination. So, it can be said that complacency is the greatest enemy getting things done so even writing.

2.       Cultural link: Uhmm……….There may be some truth in saying that there is some cultural link. Some may agree, others equally disagree. I am of the opinion that it plays some role in our part of the world. If I am from a family of higher social strata, it is most likely that I am going to be well versed in Sanskrit text or "Slokas" or English (why?..this another area of discourse..) so, there is every likely that I will excel in education. While from a poor or disadvanted family, there is every possibility that s/he may drop out early from school because of various reasons (why?..this also another area of discourse..). Even if you rise up the social ladder, you have to struggle lot so you will have ample time to write and get your work get published. I can give lots of example for this.
  • Reading and writing culture: What does it mean is lack of reading and writing culture in developing countries compared to western developed countries can be one reason (exceptions are there). I think many of us believe this arguement though it may sound flimsy for some of you.
  •  
  • Hierarchical culture: If you dissect historical, cultural and religious facts in low income countries like Nepal, I have to say that hierarchical culture is hindrance to the spread of equal opportunity for people.  But, on the contrary, we still observe social practices that is keep certain community of people away from mainstream social benefit like education.
  •  
3.       Peer groups / academic clubs:  I find influence of social network or academic circle to be an important reason. Let me put this way - If you are in close circle of obese friends, it is said that there is a likelihood that you are also going to be obese over a period of time. So, the same analogy can be applied to writing and publishing paper. If there is a culture of regular discussion at journal club or debate at debate house, then there is every possibility that your mind will get ignited with some idea or concept at some point of time, which compels you to write and share your idea among your colleagues. Who knows, that simple idea could turn to be a landmark paper, if well written.
 
4.       Mentorship / coaching: Another important reason can be lack of formal mentoring to learn through guidance, somewhat like apprenticeship or internship. Although, there used to be a system of teacher and student (Guru and Chela) in Vedic period in Mah Bharat region, it was meant only for people of certain origin, whereas major proportion of population was ignored from this opportunity.  Now, this proportion of people kept away from formal or informal education, may be decreasing, but there are still millions of people, who are unfortunate to get the opportunity of proper education.

These are my general  and personal statement. There may be many counter - guments against what I am saying and I may be wrong, too. These points are based on my personal experiences in the area, where I was brought up and the kind of schooling that I received. To elaborate a bit more on the kind of education that we recieved. ow, I realize, our education was based primarily on memorizing rather than focus on comprehension of the subject. I never felt, there was importance given to improve reading, writing and comprehension skills. I also want to share that there was no proper library till we completed class 12. Because of poor education in government school, many parents were bound to send their children in missionary school or private boarding schools. I have many stories to share on how we learnt English, why was it necessary?  What are the difficulties if English is your 3rd or 4th language? How difficult is it to express your ideas, thoughts or concepts in English?  What is linguistic gap? I leave all these entire questions for others to ponder and share their opinion, while I will try to answer in my next post.

Jul 22, 2013

Paradox


“As the dew is dried up by the morning sun, / So are mankind’s sins at the sight of Himalaya,” read the Puranas. That was before global travel reached the remotest peaks and before climate change threatened the glaciers. And that was when artists painted Vaishnavi as an idealized form without evidence of muscle or bone.

"Now, HIV-infected sex-trafficked women and girls from Nepal are more likely than those not infected to also have syphilis and hepatitis B. In one of her many manifestations, Vaishnavi protected her devotees from fear and gave them peace. The task now falls on global public health and its multiple hands."
Link:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2600303/ 
## I happen to google searching for emerging diseases in Nepal. I came across Emerg Infect Dis. 2008 June; 14(6): 1009–1010. In the front page, there was the picture of Vaishnavi, a Hindu deity. Reading through the page, it writes on a rich historical past of Himalayan kingdom and also, talks about the natural beauty blended with rich artistic Newari culture. Such was Nepal, the birthplace for Budhism, which is philosophy that preach equality and moral ethics that is relevant now more than ever. It was also a melting pot for various religious thoughts like Hinduism and Jainism to co - exist in continious intellectual dialogue and discourse searching for the meaning of life in simplicity

 ## But now, it is sad to read in this prestigious scientific paper, the flight of poor women from village especially of untouchables and other underpriviledged community, who are being sold to sex brothels in cities inside and outside of country. There are many reasons, why this is happening. If I go into that area of discourse, I will be emotional rather than rationale in my writing. So, I will not touch upon that. However, it is now important for Nepalese and Indian government to act tough on human trafficking. Just take, physical health issues apart from  psycho - social effects, it has brought upon our society, this has cost us huge amount of health budget in caring them. Bitter truth is that most of them, who dare to come back home escaping brutality, come with HIV / Hep B or Hep C infection only to die in Nepal rather in sex den, where they are treated not even like a dog. Atleast a dog can bark, when it prefers to and loiter around the city free !!
 

Jul 18, 2013

Key facts: Cholera

Key facts

  • Cholera is an acute diarrhoeal disease that can kill within hours if left untreated.
  • There are an estimated 3–5 million cholera cases and 100 000–120 000 deaths due to cholera every year.
  • Up to 80% of cases can be successfully treated with oral rehydration salts.
  • Effective control measures rely on prevention, preparedness and response.
  • Provision of safe water and sanitation is critical in reducing the impact of cholera and other waterborne diseases.
  • Oral cholera vaccines are considered an additional means to control cholera, but should not replace conventional control measures.
Reference:
http://www.who.int/mediacentre/factsheets/fs107/en/

Cholera vaccine: A brief summary of March 2010 Position paper

Link: http://www.who.int/immunization/Cholera_PP_Accomp_letter__Mar_10_2010.pdf

 

Jul 17, 2013

Correlated infections


Farrington CP, Whitaker HJ, Unkel S, Pebody R. Correlated infections: quantifying individual heterogeneity in the spread of infectious diseases. American Journal of Epidemiology. 2013;177(5):474-486.

Abstract: In this paper, we propose new methods for investigating the extent of heterogeneity in effective contact rates relevant to the transmission of infections. These methods exploit the correlations between ages at infection for different infections within individuals. The methods are developed for serological surveys, which provide accessible individual data on several infections, and are applied to a wide range of infections. We find that childhood infections are often highly correlated within individuals in early childhood, with the correlations persisting into adulthood only for infections sharing a transmission route. We discuss 2 applications of the methods: 1) to making inferences about routes of transmission when these are unknown or uncertain and 2) to estimating epidemiologic parameters such as the basic reproduction number and the critical immunization threshold. Two examples of such applications are presented: elucidating the transmission route of polyomaviruses BK and JC and estimating the basic reproduction number and critical immunization coverage of varicella-zoster infection in Belgium, Italy, Poland, and England and Wales. We speculate that childhood correlations stem from confounding of different transmission routes and represent heterogeneity in childhood circumstances, notably nursery-school attendance. In contrast, it is suggested that correlations in adulthood are route-specific.

Jul 15, 2013

Regarding Hepatitis of Infectious Origin

Editorial: A brighter future in the fight against hepatitis Article: Current progress in development of hepatitis C virus vaccines

Nature Medicine
July 2013, Volume 19 No 7 pp791-945
http://www.nature.com/nm/journal/v19/n7/index.html

Editorial
A brighter future in the fight against hepatitis
doi:10.1038/nm.3269
Public health and research efforts directed at managing and targeting viral hepatitis have borne fruit in recent decades. However, more work is necessary to meet the goals of preventing transmission and treating infection to eliminate the enormous burden of hepatitis worldwide.
In 2012, the World Health Organization (WHO) established a Global Hepatitis Program with the goal of fully preventing and treating viral hepatitis. This month, the WHO hopes to increase public awareness through the official World Hepatitis Day, on 28 July. In this issue, Nature Medicine features a series of Review and Perspective articles that discuss promising research and clinical efforts and continuing challenges in viral hepatitis.
Hepatitis B virus (HBV) and HCV are primarily responsible for the high global prevalence of hepatitis disease and for the morbidity and mortality associated with chronic infection. A key challenge for the management of hepatitis is its silent progression, as acute hepatic failure rarely occurs. Infection is often asymptomatic, causing liver scarring and damage decades later in up to 30% of people infected with HCV, and the proportion is even higher in those infected with HBV at birth or during early childhood. Inadequate recognition of infection and region-specific variation in prevalence and risk groups hinders diagnosis and precludes timely treatment. The lack of sufficiently widespread antibody screening to identify all exposed individuals and of follow up with RNA testing, a technique not yet available for routine medical use, to distinguish people with active virus, results in incorrect estimates of infection and increased transmission. In the case of hepatitis C, recent human studies showed that less than half of the infected people in the United States knew they carried the virus (Hepatology 55, 1652–1661, 2012), a number that may be higher in areas with limited disease-control tools. Moreover, the harsh side effects of pegylated interferon-α and ribavirin force many infected people to opt out of this standard therapy, contributing to viral persistence in the community and prevalence of chronic disease.
The advent of effective antivirals is changing the therapeutic landscape, and the goal for eradicating hepatitis viruses may not be as distant as it seemed five years ago, high treatment costs notwithstanding. Current antiviral therapies do not cure chronic hepatitis B, which affects about 210 million people worldwide. At the 2013 International Liver Congress, new approaches to eliminate the HBV replication template, which persists inside liver cells, by modulating host processes such as epigenetic mechanisms and hepatocyte regeneration showed promise and may offer the potential of a cure in the future. For HCV, which affects about 150 million individuals worldwide, there have been rapid advances in drugs. Two protease inhibitors approved in 2011 greatly improved responses in patients infected with the predominant genotype 1; however, host genetic variability affecting antiviral efficacy, evolving drug resistance and the lack of coverage to inhibit all existing HCV genotypes are major drawbacks. Also, these new drugs must be given with the standard therapy, which exacerbates side effects. Second-generation antivirals with different viral targets are under development, and combination strategies should improve efficacy and may even eradicate the virus. Although these therapies are promising, resistance may still develop, and monitoring the emergence of resistant variants will be necessary for guiding treatment choices.
An interferon-free therapy for hepatitis C may also soon exist. In April, a triple combination of direct-acting antivirals without interferon showed efficacy in treatment-naive individuals and in nonresponders to standard of care. And in May, four clinical trials tested an inhibitor of viral polymerase, sofosbuvir, in patients infected with HCV (N. Engl. J. Med. 368, 1867–1887, 2013). In combination with ribavirin, sofosbuvir showed increased efficacy against genotypes 2 and 3 compared to both standard of care and placebo, and adding pegylated interferon alpha-2a to the combination achieved broad genotype coverage. Patients with unacceptable side effects to standard therapy or who were unresponsive to previous therapies may therefore benefit from these new approaches. Research on host factors required for the HCV life cycle has also yielded targets that may overcome virus-acquired resistance and circumvent side effects. A recent example is the targeting of microRNA-122, which is liver specific and necessary for viral replication (N. Engl. J. Med. 368, 1685–1694, 2013) Although long-term studies are necessary to address their safety and toxicity in the long run, interferon-free strategies may become the future of hepatitis C therapy.
But the holy grail for eradicating and decreasing the burden of any infectious disease is a prophylactic vaccine. Prevention of infection with the effective HBV vaccines and with improved medical and lifestyle practices has reached impressive levels in developed countries, and continuing efforts to improve testing and implement mass vaccination programs in low-income countries should achieve similar results in these regions. A working vaccine for HCV, however, still remains elusive, in part because of the lack of experimental systems to study the virus and the lack of animal models to test vaccine candidates. Moreover, because this virus has developed mechanisms of persistence and has an enormous genetic diversity, vaccines will need to induce both neutralizing antibodies and T cell–mediated responses to achieve broad, lasting cross-protection. Unraveling how the host immune response clears the virus during the course of natural infection and prevents persistence will help us understand what constitutes protective immunity and provide a rationale to develop an effective pan-genotype vaccine.
The goals of preventing infection, slowing disease progression and curing chronic hepatitis will undoubtedly require continuing research and clinical efforts. Pharmaceutical companies should be encouraged to keep investigating future compounds to overcome the existing therapeutic barriers, and public awareness efforts should be intensified to underscore to funding and public health agencies that, although we are closer, we are still far from achieving the goals proposed to tackle these silent elusive killers.
http://www.nature.com/nm/journal/v19/n7/full/nm.3269.html

Jul 11, 2013

Vaccine Preventable Diseases Outbreaks in South Asian countries





















Mapping of Vaccine Preventable Diseases (VPDs) outbreaks in Asian region. The map shows many measles outbreaks . This means that measles is still a public health problem. So, various questions can be raised relatedwith the quality of immunization program in those affected areas. If you want details each country of your interest, please refer to the link. Also, questions / thoughts are welcomed. For every reason, there is also another reason.

http://www.cfr.org/interactives/GH_Vaccine_Map/index.html?goback=%2Egde_1868035_member_251194921#map

NyayaHealth, Achham - a center of dedicated staffs

I would like to share this blog that tells the story of NyayaHealth, Achham. I am of the opinion, this hospital has done justice to its name.

Nyaya = justice, which is a rare privilage for people living in hard to areas of any country and in particular, peolpe away from DHQ in these ruaral district of far western developmental region of Nepal in particular suffers a lot from inequalities and lack of access to basic health services. This district also has the highest under 5 children and maternal mortality as any other district with poor developmental index.

http://www.nyayahealth.org/blog/

Jul 8, 2013

Application of WHONET for Surveillance of Uropathogens: A First User Experience from Nepal

2013 May;7(5):845-8. doi: 10.7860/JCDR/2013/5193.2955. Epub 2013 May 1.

Application of WHONET in the Antimicrobial Resistance Surveillance of Uropathogens: A First User Experience from Nepal.

Source

Department of Microbiology, Gujarat Adani Institute of Medical Sciences (GAIMS), G K General Hospital , Bhuj, Kutch, Gujarat, India - 370001 .

Abstract

Introduction: WHONET is a freely downloadable, Windows-based database software which is used for the management and analysis of microbiology data, with a special focus on the analysis of antimicrobial susceptibility test results. Urinary Tract Infections (UTI) are a common medical problem and they are responsible for notable morbidity among young and sexually active women. Objectives: The major objective of this study was the utilization and application of the WHONET program for the Antimicrobial Resistance (AMR) surveillance of uropathogens. Methods: A total of 3209 urine samples were collected from patients who visited Manipal Teaching Hospital with a clinical suspicion of UTI, during December 2010 to July 2011. The isolation and characterization of the isolates were done by conventional methods. Antimicrobial Susceptibility Testing (AST) was performed by Kirby Bauer's disc diffusion method. The data entry and analysis were done by using the WHONET 5.6 software. Results: Out of the 3209 specimens, 497 bacterial isolates were obtained and they were subjected to AST. Escherichia coli (66.2%) was the commonest bacterial isolate, followed by Enterococcus species (9.3%), Staphylococcus aureus (5.0%), and Klebsiella pneumoniae (4.2%). Among the gram-negative enteric bacilli, a high prevalence of resistance was observed against ampicillin and ciprofloxacin. The gram negative nonfermenters exhibited a high degree of resistance to ceftazidime. Staphylococcus species. showed a moderately high resistance to co-trimoxazole. One isolate was Vancomycin Resistant Enterococci (VRE). Conclusion: This study, a first of its kind which was done in Nepal, was carried out by using the WHONET software to monitor, analyze and share the antimicrobial susceptibility data at various levels. This study was also aimed at building a surveillance network in Nepal, with the National Public Health Laboratory, Nepal, acting as a nodal centre. This would help in the formulation of antibiotic policies and in identifying hospital and community outbreaks at the nodal centre, as well as in sharing information with the clinicians at the local level.

Reflections on the Global Burden of Disease 2010 Estimates

Summary points of an article reviewing the Global Burden of Disease 2010 estimates: (Source: http://centerforvaccineethicsandpolicy.net)

 
:: Health data include many gaps, particularly relating to poorer areas of the world, so complex estimation techniques are needed to get overall global pictures.
:: Estimates of population health, however, carry their own uncertainties and may be flawed in some instances.
:: Here we present a range of reflections on the Global Burden of Disease 2010 estimates, highlighting their strengths as well as challenges for potential users.
:: In the long term, there can be no substitute for properly counting and accounting for all the world’s citizens, so that complex estimation techniques are not needed.

The Institute for Health Metrics and Evaluation (IHME) and its partners recently completed what is probably the largest ever exercise undertaken in epidemiological modelling, the Global Burden of Disease 2010 (GBD-2010) estimates [1]. These estimates attempt to characterise loss of health from disease and injury, including the effects of some major risk factors, on a global basis. They will find widespread use in coming years and influence developments in global health. However, it is important to realise that “estimates are estimates, and not measurements”; they may perform better in some respects than others [2]. Here, as a group of independent experts, we comment on some of the major issues raised by this important work, while noting that it is impossible to cover all the wealth of detail involved in any critique. We take collective responsibility for these views, though many specific points come from individual specialists among the authors.

PLoS Medicine
http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.1001477


Note:
  • Health data in low income countries?
  • Estimates of population health through modelling?
  • Denominator issues?

 

Jul 5, 2013

Assessment of Surveillance System in Maharastra, India

 
Abstract


BACKGROUND:

Monitoring the progress of the Integrated Disease Surveillance (IDS) strategy is an important component to ensure its sustainability in the state of Maharashtra in India. The purpose of the study was to document the baseline performance of the system on its core and support functions and to understand the challenges for its transition from an externally funded "project" to a state owned surveillance "program".

METHODS:

Multi-centre, retrospective cross-sectional evaluation study to assess the structure, core and support surveillance functions using modified WHO generic questionnaires. All 34 districts in the state and randomly identified 46 facilities and 25 labs were included in the study.

RESULTS:

Case definitions were rarely used at the periphery. Limited laboratory capacity at all levels compromised case and outbreak confirmation. Only 53% districts could confirm all priority diseases. Stool sample processing was the weakest at the periphery. Availability of transport media, trained staff, and rapid diagnostic tests were main challenges at the periphery. Data analysis was weak at both district and facility levels. Outbreak thresholds were better understood at facility level (59%) than at the district (18%). None of the outbreak indicator targets were met and submission of final outbreak report was the weakest. Feedback and training was significantly better (p < 0.0001) at district level (65%; 76%) than at facility level (15%; 37%). Supervision was better at the facility level (37%) than at district (18%) and so were coordination, communication and logistic resources. Contractual part time positions, administrative delays in recruitment, and vacancies (30%) were main human resource issues that hampered system performance.

CONCLUSIONS:

Significant progress has been made in the core and support surveillance functions in Maharashtra, however some challenges exist. Support functions (laboratory, transport and communication equipment, training, supervision, human and other resources) are particularly weak at the district level. Structural integration and establishing permanent state and district surveillance officer positions will ensure leadership; improve performance; support continuity; and offer sustainability to the program. Institutionalizing the integrated disease surveillance strategy through skills based personnel development and infrastructure strengthening at district levels is the only way to avoid it from ending up isolated! Improving surveillance quality should be the next on agenda for the state.

Link:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3693947/

end the neglect

Jul 4, 2013

Dengue Virus and Japanese Encephalitis Virus Epidemiological Shifts in Nepal

This article report that there is an epidemiological shifts from high  burden Japanese Encephalitis (JE) in the past to Dengue Virus (DENV) infection at present in Nepal. This must be due to the introduction of JE vaccine. Initially, the Ministry of Health - Government of Nepal introduced  country- wide  JE mass vaccination successfully in phase - wise manner. Now, the mass vaccination is replaced with routine immunization through integration of this vaccine in National Immunation Program (NIP). As the key component of national JE control program, the country - wide laboratory based JE surveillance is going on. At this juncture, the publication of this article will provide a strong evidence for the policy makers to integrate and implement DENV laboratory surveillance in the country. This is also important to remember that an effective surveillance inplace will provide true epidemiological picture of the disease to Department of Health Service (DHS), Epidemiology and Disease Control Division (EDCD).      
 
Reference:
 
Am J Trop Med Hyg. 2013 April 3; 88(4): 677–680. doi: 10.4269/ajtmh.12-0436
 Abstract of the article
 
"We report on the changing epidemiology of two important flaviviruses in Nepal: Japanese encephalitis (JE) and dengue viruses. Morbidity and mortality in Nepal is in the thousands since JE was introduced in 1978. Nepal launched an extensive laboratory-based JE surveillance in 2004. Nepal experienced a remarkable reduction in disease burden after mass immunizations from 2005 to 2010, when 2,040 JE infections and 205 JE-related deaths were confirmed. With its emergence in 2006, dengue has become a significant challenge in the country, highlighted by a sudden outbreak in 2010 that resulted in 359 confirmed dengue infections. Currently, both viruses cocirculate in Nepal. Here, we document the remarkable expansion of dengue in Nepal, which urgently requires national surveillance to refine the burden and make recommendations regarding control and prevention programs. We believe that the use of existing JE surveillance network for integrated dengue surveillance may represent the most appropriate alternative."

Jul 2, 2013

Viral Sovereignty

It is definitely a dangerous idea, when a government's health minister holds an opinion like "Viral Sovereignty", at the backdrop of Global Human - Avian Influenzae scare and its pandemic potential. I hope that all those who hold such an idea change their opinion for the shake of humankind.

Please read:

http://articles.washingtonpost.com/2008-08-10/opinions/36864341_1_flu-outbreaks-bird-flu-siti-fadilah-supari

Mobile Apps. for public health profesionals

CDC has a number of mobile apps available on a variety of platforms, iOS, Android and Microsoft Windows 8. Download CDC's free mobile apps to your device today.

http://www.cdc.gov/mobile/mobileapp.html

Jul 1, 2013

Immunolgy and microbiota


Nature Immunology
July 2013, Volume 14 No 7 pp645-763
http://www.nature.com/ni/journal/v14/n7/index.html

"Interactions between the immune system and microbiota influence local and systemic immune homeostasis. Nature Immunology presents a series of specially commissioned articles that discuss the reciprocal regulation between the host immune system and commensal microbiota, the dynamic interactions between commensals and pathogens, and emerging information on how resident viruses might influence immune homeostasis. The web focus also includes highlights of recent research in this area."

http://centerforvaccineethicsandpolicy.net/

Jun 26, 2013

Nipah Outbreaks in Bangladesh

A recent article published in EID

"Active Nipah virus encephalitis surveillance identified an encephalitis cluster and sporadic cases in Faridpur, Bangladesh, in January 2010. ..... identified 16 case-patients; 14 of these patients died. For 1 case-patient, the only known exposure was hugging a deceased patient with a probable case, while another case-patient’s exposure involved preparing the same corpse for burial by removing oral secretions and anogenital excreta with a cloth and bare hands. Among 7 persons with confirmed sporadic cases, 6 died, including a physician who had physically examined encephalitis patients without gloves or a mask. Nipah virus–infected patients were more likely than community-based controls to report drinking raw date palm sap and to have had physical contact with an encephalitis patient (29% vs. 4%, matched odds ratio undefined). Efforts to prevent transmission should focus on reducing caregivers’ exposure to infected patients’ bodily secretions during care and traditional burial practices."

Link:

http://wwwnc.cdc.gov/eid/article/19/2/12-0971_article.htm

Update from IEDCR, Bangladesh (2013)

"As of 15May 2013, 24 cases of Nipah virus infection have been reported in Bangladesh since the beginning of 2013, of which 21 cases have died. These cases are from 13 different districts (Gaibandha, Jhinaidaha, Kurigram, Kushtia, Magura, Manikgonj, Mymenshingh, Naogaon, Natore, Nilphamari, Pabna, Rajbari, Rajshahi). The age distribution of cases is from 8 months to 60 years. Sixteen cases are male and eight are females."

Link:

http://www.iedcr.org/index.php?option=com_content&view=article&id=106



 

Jun 24, 2013

Outbreak of Cholera in Tilathi VDC Saptari Nepal

Measles Outbreak in Pakistan

Time: 2013

Place: Across the country

Person:
  • 25,401 reported cases in less than four months this year.
  • At least 146 children  have lost their lives due to the disease.
In 2012, out of 7,000-plus laboratory confirmed measles cases , around 60% of children were not provided even a single dose of the measles vaccine, while 20% were inoculated with only one dose. It is said that Pakistan may face an international travel ban.

Link:

http://tribune.com.pk/story/550040/measles-outbreak-pakistan-may-face-international-travel-ban/

Thoughts on Cholera Outbreaks in Nepal


As a glimpse to prevailing public health situation, Nepalese people saw huge cholera outbreaks in western part of the country. This disease affected every facet of everyday social life, leaving some at the mercy of their innate immunity or home remedies. Nepal is endemic for cholera and every year, there are several reports of outbreak from various corners of the country. Despite all effort to save as many lives as possible, many unfortunates lost their near and dear to this merciless disease in 2009. These kind of outbreaks have reminded us time and again that such unwanted events can be averted with good surveillance network and putting efficient health delivery system in place. This is just one example among many scourges that has hit hard in hard to reach areas of the country. It is also imperative to understand the fact that there is an added challenge to the health system of country with due to increasing population density, which is compounded by epic poverty and ongoing volatile political impasse. These have more than ever pressed Government of Nepal for strong integrated epidemiological surveillance of infectious diseases in the community.

Jun 23, 2013

Cholera Outbreak in Far Western Region of Nepal



This article linked here in this blog provides us an account of "an outbreak of diarrheal diseases in districts of far-western region of Nepal in late-2009 followed by massive outbreak in Jajarkot district of mid-western region in early-2009. The objective of this study was to explore the causative organism and analyse the sensitivity pattern of the antibiotics in the local context to suggest the use of medicine in future diarrhea outbreak in Nepal. "

Link:

http://www.jnhrc.com.np/index.php?journal=nhrc

Report of Cholera Outbreaks in India

TRACKING

Source: Time of India (TOI)

Time: May - June, 2013

Place: Goa State, central jail at Aguada and the judicial lock-up at Mapusa.

Person:
  • 15 prisoners from the central jail were admitted at the Goa Medical College, Bambolim on May 31
  • 128 inmates of central jail at Aguada and the judicial lock-up at Mapusa were sick (last week of May - 1st week of June)
Laboratory Test:
 It is reported that some water samples were taken from the central jail by health services and food and drug administration officials, it tested positive for the E. coli bacteria, which suggest that the drinking water was contaminated by human excreta. However, it is not reported whether fresh / rectal stool examination for Vibrio cholerae was done or not. Nonetheless, the clinicians are pretty sure that the clinical features pointed towards cholera. There was also report of 1 death from acute diarrheal illness thus reported.

Jun 21, 2013

Historical report of Cholera outbreaks in Nepal

When I happen to read  an article in the form of report with a title, " Report on the Cholera Epidemic of 1885 in Nepal; with short description of the topography and ihabitats of the valley", it was like time travel back to Rana regime.The author of the article is G H Gimlette, M.D., Residency - Surgeon and published on May 22, 1886. I think, this is the first scientific study and report of any disease outbreak investigation in Nepal. The description of the outbreak is vivid and the demography, geography and the sanitation and hygiene practice of those times are also decribed so clearly.

This article states that the first recorded epidemic of cholera in Nepal took place in 1823 and then next in 1831. Thereafter, there were series of epidemics in Kathmandu valley in 1843, 1856, 1862 and 1887.

Update on GEMS paper discussion

The Journal Club discussion on GEMS paper was interesting wider participation from various department esp. laboratory. However, I have to say that there was lack of participation from  junior scientists. So, there is still room for improvement.

The main idea of Journal club was to bring various experts in one table and discuss on the paper from various perspective and learn from each other.The discussion was interactive and lively with bold questions. I will write more on these questions in later posts.

One important question that I came up durin discussion was related to proportion of cholera cases among MSD < 5 years of children in Bangladesh, India and Pakistan and its relation with oral cholera vaccination.
 

                           
 
                           
  

Jun 17, 2013

On June 19, 2013, we are conducting an important discussion on a paper that was published in a Lancet re: moderate to severe diarrheal illness (MSD). This was a 3 years  multi centre prospective case control study popularly known as the Global Enteric Multicenter Study, GEMS. The main purpose of the study was to find out the burden and aetiology of diarrheal diseases in infants and young children in developing countries.


For more information, please visit the GEMS homepage for links to the study press release, a fact sheet, supplemental country-specific fact sheets, and an infographic summarizing study findings.

 

Nov 6, 2010

Task

 
  1. Team building: the concept of MATRIX organization seems promising. Needs more reading. 
  2. Concept / idea generation: Brainstorming needed
  3. Research on the idea / concept: ACTION based SMART objectives
  4. Social networking through web page / gmail / facebook etc
          Going through google, I found a resource rich site that helps you to increase your network

          Link: http://www.dailyblogtips.com/

     5. Academic writing
     6. Publication (academic as well as dailies)
     7. Strategic plan (2010 - 2015)
Note:

After a long gap, I am updating this blog from now on. This blog will focus on emerging and re - emerging infectious diseases in South Asian countries like cholera, Hepatitis E virus (HEV), Typhoid fever, Dengue fever, Japanese encephalitis (JE), Malaria etc


 

Jun 3, 2010

Immunization in Municipality, Lahan

Immunization of children with target antigen and reaching every child is growing challenge in every municipality. There is an urgent need for coordination and cooperation between municipality and public health authority at local level as well as at ministerial level. Recent findings (research as well as our observations) suggest that rapid urbanization and intra / inter country immigration is a global trend and this has direct/indirect effects on health of children and mothers at every level.

Mar 24, 2010

Bird Flu in Banke reports Nepalnews.com

Nepalnews,com has reported Aian Influenza (AI) in Banke (Terai) district in Mid Western Developmental region of Nepal. It is not surprising that AI is detected in Banke due to the porous Indo - Nepal boder, poor border management and weak surveillance system in Nepal. Doubt remains, whether we have been able to detect most of the suspected AI outbreaks?. Please read below published in Nepalnews.com, "Bird flu, the Avian Influenza H5N1 virus, has been detected in various four places of Banke district.District Livestock Services Office, Banke confirmed the prevalence of bird flu in the district on Tuesday after it received a report from the central laboratory in Kathmandu. It had sent samples of poultry products after over 150 chickens and ducks died in a short span in Binauna, Kohalpur, Phattepur and Nepalgunj. Authorities have started taking special measures to control the virus from spreading. They have declared Chacharpharka of Binauna – 4 as the ‘hotspot” and decided to kill and desterilise poultry and poultry products in and around the area. An emergency meeting of chiefs of various offices in the district Tuesday decided to take the special measures at Chacharpharka and 500 metres around it. Although, bird flu was found in Kohalpur, Phattepur and Nepalgunj municipality, authorities have said necessary action have already been taken in those places."

Link:

http://www.nepalnews.com/main/index.php/news-archive/19-general/4938-bird-flu-detected-in-banke.html

Feb 24, 2010

Emerging infectious diseases (In short, EID)

"Emerging infectious diseases" refers to diseases of infectious origin whose incidence in humans has either increased within the past two decades or threatens to increase in the near future.

Strategies that need to be implemented for Coping with EIDs in Nepal.

Surveillance: Detect, promptly investigate, and monitor emerging pathogens, the disease they cause, and the factors influencing their emergence

Applied research: Integrate laboratory science and epidemiology to optimize public health practices.

Prevention and control: Enhance communication of public health information about emerging diseases and ensure rapid implementation of preventable strategies.

Infrastructure: Strengthen village, district and regional level public health infrastructure to support surveillance and implement prevention and control measures.

Reference:

The New Public Health: An Introduction for the 21st Century by Theodore H. Tulchinsky and Elena A. Varavikova

Interesting blog on medical geography

Feb 23, 2010

Outbreak news in "Nepalese Media"


This is a common news headline in Nepalese daily newspaper like "Unidentified disease claims dozen lives in Bhaktapur". The question is what does the word "unidentified" means to the media and general mass. Referring to The Oxford dictionary, it means "nameless, anonymous, faceless, unnamed, unknown, undisclosed, unrevealed, mysterious" 

Nepalnews.com on Feb 10, 2010  reported, "At least 11 persons have died in the past one month of an illness with similar symptoms in a Tamang village in Chagu Narayan VDC, Bhaktapur located in the north-east of the Kathmandu valley". Also reports that "panic has gripped the villagers after young people started dying hours after showing symptoms of illness. Everyone who died in the past month showed similar symptoms before death. They complained of headache, temperature and dizziness and oozed out fizz from their mouth and died within hours. The villagers have neither been taking the patients to hospital nor making any efforts for medical treatment. Instead, they resorted to traditional healing including employing traditional healers like Dhamis and Jhankris. VDC secretary of Chagu Narayan informed the public health office of the illness. None of the health professionals have reached the village as of Tuesday. Officials have said, doctors are going to the hospital on Wednesday. Those who died in the past month due to the disease include Rakesh Tamang, 27, Kumar Tamang, 21, Risimaya Tamang, 29, Bila Tamang, 32, and Poornimaya Tamang, 42."
 
Note:
 
There are few serious questions that stands out and has to be debated among health policy makers, senior health adminstrators, civil society, local leaders, teachers and other stakeholders.
  1. Why is there such carrelessness on the part of district public health office in responding to this outbreak?
  2. Could it be that the negligence is related to discrimantory attitude on the part of responsible health personnels?

Feb 19, 2010

Spot diagnosis

Can you imagine? The white paste applied over the weeping lesion is PARACETAMOL!!!! How come this so? The simple being that there was no health personnel in the sub health post (SHP) and it was by an attendent. However, the disease was identified as scabies and treated with anti-scabies drug and completely cured.

Feb 16, 2010

Rubella (German Measles) Outbreak in Himalayan district of Nepal

Picture taken by Anuj Bhattachan (red rash in the face)

There are increasing reports of rubella outbreaks in Nepal, detected through vaccine preventable diseases (VPDs) surveillance network in Nepal. This photo of a child was taken during an investigation of a "suspected measles like illness" outbreak in Mustang, a remote and extremely "hard to reach" Himalayan district in Western part of Nepal.
 
Follow up note:
 
Government of Nepal has introduced rubella vaccine through mass vaccination along with measles vaccine country wide. Now, the rubella vaccine is integrated to EPI schedule given at 9 months with measles vaccine.
 
 


श्री. सर्बोदय नि माँ बी स्कूल, तातोपानी, म्याग्दी, नेपाल.

Anuj in Himalayas

Hi i am connecting disqus with my blog for healthy interaction and open dialogue